Stem-loop ptr-let-7b

Accession

MI0008400

Description

Pan troglodytes ptr-let-7b precursor miRNA

Literature search

12 open access papers mention ptr-let-7b
(19 sentences)

Sequence

8213774 reads, 78067.0 reads per million, 24 experiments

ggggUGAGGUAGUAGGUUGUGUGGUUUCagggcagugauguugccccucagaAGAUAACUAUACAACCUACUgccuucccug
((((.(((((((((((((((((((((((.((((((.....)))))).......)).))))))))))))))))))))))))).

Structure

-    U                     -  ------a      u 
 gggg GAGGUAGUAGGUUGUGUGGUU UC       gggcag g
 |||| ||||||||||||||||||||| ||       |||||| a
 uccc uuccgUCAUCCAACAUAUCAA AG       cccguu u
g    -                     U  Aagacuc      g 

Annotation confidence Medium

Genome context

chr22: 32895718-32895799 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-let-7b

Mature ptr-let-7b-5p

• Accession: MIMAT0007937
• Description: Pan troglodytes ptr-let-7b-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUGUGGUUUC - 28
• Evidence: not_experimental

Mature ptr-let-7b-3p

• Accession: MIMAT0052263
• Description: Pan troglodytes ptr-let-7b-3p mature miRNA
• Sequence: 53 - AGAUAACUAUACAACCUACU - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70