Stem-loop ptr-let-7c

Accession

MI0008401

Description

Pan troglodytes ptr-let-7c precursor miRNA

Literature search

9 open access papers mention ptr-let-7c
(20 sentences)

Sequence

6266989 reads, 63324.0 reads per million, 24 experiments

cauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagc
..((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))..

Structure

ca      uU   G   U             ua  g ua  c 
  uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
  ||||||  ||| ||| |||||||||||||  || |  || c
  agguuc  uuc auc uccaacaugucaa  uu a  gu  
cg      cu   g   u             --  g gg  c 

Annotation confidence Not enough data

Genome context

chr21: 2986489-2986571 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-let-7c

Mature ptr-let-7c-5p

• Accession: MIMAT0007938
• Description: Pan troglodytes ptr-let-7c-5p mature miRNA
• Sequence: 10 - UGAGGUAGUAGGUUGUAUGGUU - 31
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70