Stem-loop ptr-let-7d

Accession

MI0008402

Description

Pan troglodytes ptr-let-7d precursor miRNA

Literature search

8 open access papers mention ptr-let-7d
(20 sentences)

Sequence

636032 reads, 5418.0 reads per million, 24 experiments

cuaggaAGAGGUAGUAGGUUGCAUAGUUUuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUUagg
((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))).

Structure

-      A              C      -------Uua      g 
 cuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
 |||||| |||||||||||||| ||||||          |||||| a
 gaUUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
g      -              A      uggaggaaca      u 

Annotation confidence High

Genome context

chr9: 71915622-71915707 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-let-7d

Mature ptr-let-7d-5p

• Accession: MIMAT0007939
• Description: Pan troglodytes ptr-let-7d-5p mature miRNA
• Sequence: 7 - AGAGGUAGUAGGUUGCAUAGUUU - 29
• Evidence: not_experimental

Mature ptr-let-7d-3p

• Accession: MIMAT0052264
• Description: Pan troglodytes ptr-let-7d-3p mature miRNA
• Sequence: 61 - CUAUACGACCUGCUGCCUUUCUU - 83
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70