Stem-loop ptr-let-7d

Accession

MI0008402

Description

Pan troglodytes ptr-let-7d precursor miRNA

Literature search

4 open access papers mention ptr-let-7d
(9 sentences)

Sequence

cuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucuuagg
((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))).

Structure

-      A              C      -------uua      g 
 cuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
 |||||| |||||||||||||| ||||||          |||||| a
 gauucu uuccgucguccagc uaucaa          cccguu u
g      -              a      uggaggaaca      u 

Annotation confidence Not enough data

Genome context

chr9: 71915622-71915707 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-let-7d

Mature ptr-let-7d

• Accession: MIMAT0007939
• Description: Pan troglodytes ptr-let-7d mature miRNA
• Sequence: 7 - AGAGGUAGUAGGUUGCAUAGUU - 28
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70