Stem-loop ptr-let-7e

Accession

MI0008403

Description

Pan troglodytes ptr-let-7e precursor miRNA

Literature search

8 open access papers mention ptr-let-7e
(14 sentences)

Sequence

1610981 reads, 12688.0 reads per million, 24 experiments

ccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucaCUAUACGGCCUCCUAGCUUUCCccagg
(((((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))

Structure

  -   cU   G                U  -------  a g 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
|| |||  ||| |||||||||||||||| ||       || |  
gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc c c
  a   CU   G                -  agaggaa  - a 

Annotation confidence High

Genome context

chr19: 53915593-53915670 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-let-7e

Mature ptr-let-7e-5p

• Accession: MIMAT0007940
• Description: Pan troglodytes ptr-let-7e-5p mature miRNA
• Sequence: 7 - UGAGGUAGGAGGUUGUAUAGUU - 28
• Evidence: not_experimental

Mature ptr-let-7e-3p

• Accession: MIMAT0052265
• Description: Pan troglodytes ptr-let-7e-3p mature miRNA
• Sequence: 52 - CUAUACGGCCUCCUAGCUUUCC - 73
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70