Stem-loop ptr-let-7f-1

Accession

MI0008404

Description

Pan troglodytes ptr-let-7f-1 precursor miRNA

Literature search

4 open access papers mention ptr-let-7f-1
(9 sentences)

Sequence

9149252 reads, 84106.0 reads per million, 24 experiments

cagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcuga
(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))).

Structure

-   a U                       ---------       u 
 cag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
 ||| | |||||||||||||||||||||||         ||||||| a
 guc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
a   - C                       gaggacuug       u 

Annotation confidence Medium

Genome context

chr9: 71913135-71913220 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-let-7f-1

Mature ptr-let-7f-5p

• Accession: MIMAT0007941
• Description: Pan troglodytes ptr-let-7f-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGAUUGUAUAGUU - 27
• Evidence: not_experimental

Mature ptr-let-7f-1-3p

• Accession: MIMAT0052266
• Description: Pan troglodytes ptr-let-7f-1-3p mature miRNA
• Sequence: 62 - CUAUACAAUCUAUUGCCUUCC - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70