Stem-loop ptr-let-7g

Accession

MI0008406

Description

Pan troglodytes ptr-let-7g precursor miRNA

Literature search

12 open access papers mention ptr-let-7g
(27 sentences)

Sequence

4507087 reads, 39848.0 reads per million, 24 experiments

aggcUGAGGUAGUAGUUUGUACAGUUUgagggucuaugauaccacccgguacaggagauaaCUGUACAGGCCACUGCCUUGCc
.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).)))))))))))

Structure

a   U        A            Ugagg    -a  a    a 
 ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
 ||| |||||||| ||||||||||||     ||||  || ||||  
 cCG UUCCGUCA CGGACAUGUCaa     uaga  ac augg c
-   -        C            -----    gg  -    c 

Annotation confidence High

Genome context

chr3: 53382136-53382218 [-]

Mature ptr-let-7g-5p

• Accession: MIMAT0007942
• Description: Pan troglodytes ptr-let-7g-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGUUUGUACAGUUU - 27
• Evidence: not_experimental

Mature ptr-let-7g-3p

• Accession: MIMAT0052268
• Description: Pan troglodytes ptr-let-7g-3p mature miRNA
• Sequence: 62 - CUGUACAGGCCACUGCCUUGC - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70