Stem-loop ptr-mir-10b

Accession

MI0008411

Description

Pan troglodytes ptr-mir-10b precursor miRNA

Literature search

5 open access papers mention ptr-mir-10b
(8 sentences)

Sequence

39733 reads, 434.0 reads per million, 22 experiments

cagagguuguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccguauagucacAGAUUCGAUUCUAGGGGAAUAUauggucgaugcaaaaacuuca
..((((((....(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))....)))))).

Structure

ca      guaa     u        A    G     C          u g   c 
  gagguu    cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
  ||||||    ||||| |||||||| |||| ||||| |||||||||| | |||  
  cuucaa    guagc gguaUAUA GGGG AUCUU GCUUAGAcac u aua g
-a      aaac     u        A    -     A          - g   u 

Annotation confidence High

Genome context

chr2B: 66456565-66456673 [+]

Mature ptr-miR-10b-5p

• Accession: MIMAT0007945
• Description: Pan troglodytes ptr-miR-10b-5p mature miRNA
• Sequence: 26 - UACCCUGUAGAACCGAAUUUGU - 47
• Evidence: not_experimental

Mature ptr-miR-10b-3p

• Accession: MIMAT0052271
• Description: Pan troglodytes ptr-miR-10b-3p mature miRNA
• Sequence: 67 - AGAUUCGAUUCUAGGGGAAUAU - 88
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70