Stem-loop ptr-mir-1179

Accession

MI0008414

Description

Pan troglodytes ptr-mir-1179 precursor miRNA

Sequence

gcuggaaaggaagAAGCAUUCUUUCAUUGGUUGGuguguauugccuugucaaccaauaagaggaugccauuuauccuuuucugacuagcu
(((((((((((.((((((((((((.(((((((((...(......)...))))))))).)))))))))..))).)))))).....))))).

Structure

-     -----      a   --         C         ugu ua 
 gcugg     aaagga gAA  GCAUUCUUU AUUGGUUGG   g  u
 |||||     |||||| |||  ||||||||| |||||||||   |   
 cgauc     uuuccu uuu  cguaggaga uaaccaacu   c  u
u     agucu      a   ac         a         guu cg 

Annotation confidence Not enough data

Genome context

chr15: 69333379-69333468 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-1179

Mature ptr-miR-1179

• Accession: MIMAT0007948
• Description: Pan troglodytes ptr-miR-1179 mature miRNA
• Sequence: 14 - AAGCAUUCUUUCAUUGGUUGG - 34
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70