miRBase entry: ptr-mir-1227

Stem-loop ptr-mir-1227


Accession
MI0008433
Description
Pan troglodytes ptr-mir-1227 precursor miRNA


Sequence

guggggccaggcgguggugggcacugcuggggugggcacagcagccaugcagagcaggcauuugacccCGUGCCACCCUUUUCCCCA
.(((((..(((.((((((((((((((((.(.((((.........)))).)..))))).....)).)))...)))))))))..)))))

Structure
g     cc   c      ---   -  -----     -g g    gca 
 ugggg  agg gguggu   ggg ca     cugcu  g gugg   c
 |||||  ||| ||||||   ||| ||     |||||  | ||||   a
 ACCCC  UUC CCACCG   ccc gu     gacga  c uacc   g
-     UU   -      UGC   a  uuacg     ga g    gac 


Annotation confidence Not enough data
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Genome context
chr19: 2269377-2269463 [-]

Database links

Mature ptr-miR-1227

Accession MIMAT0007965
Description Pan troglodytes ptr-miR-1227 mature miRNA
Sequence 69 - CGUGCCACCCUUUUCCCCA - 87
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70