Stem-loop ptr-mir-1249

Accession

MI0008455

Description

Pan troglodytes ptr-mir-1249 precursor miRNA

Sequence

166 reads, 2.0 reads per million, 21 experiments

gggAGGAGGGAGGAGAUGGGCCAAGUUCccucuggcuggaACGCCCUUCCCCCCCUUCUUCAccu
.(((((((((.((.((.((((...(((((........))))))))).)).)))))))))))....

Structure

---g         A  A  U    CAA     cuc 
    ggAGGAGGG GG GA GGGC   GUUCc   u
    ||||||||| || || ||||   |||||    
    CUUCUUCCC CC CU CCCG   CAagg   g
uccA         -  C  U    ---     ucg 

Annotation confidence High

Genome context

chr22: 31976015-31976079 [-]

Mature ptr-miR-1249-5p

• Accession: MIMAT0052278
• Description: Pan troglodytes ptr-miR-1249-5p mature miRNA
• Sequence: 4 - AGGAGGGAGGAGAUGGGCCAAGUUC - 28
• Evidence: not_experimental

Mature ptr-miR-1249-3p

• Accession: MIMAT0007975
• Description: Pan troglodytes ptr-miR-1249-3p mature miRNA
• Sequence: 41 - ACGCCCUUCCCCCCCUUCUUCA - 62
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70