Stem-loop ptr-mir-125a

Accession

MI0008464

Description

Pan troglodytes ptr-mir-125a precursor miRNA

Literature search

4 open access papers mention ptr-mir-125a
(8 sentences)

Sequence

15506 reads, 132.0 reads per million, 24 experiments

gccagucucuaggUCCCUGAGACCCUUUAACCUGUgaggacauccagggucACAGGUGAGGUUCUUGGGAGCcuggugucuggcc
(((((.(.((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).)))))).).))))).

Structure

-     u u      C       C    UA        ----  a 
 gccag c cuaggU CCUGAGA CCUU  ACCUGUga    gg c
 ||||| | |||||| ||||||| ||||  ||||||||    ||  
 cgguc g ggucCG GGGUUCU GGAG  UGGACAcu    cc a
c     u u      A       U    --        ggga  u 

Annotation confidence High

Genome context

chr19: 53916062-53916146 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-125a

Mature ptr-miR-125a-5p

• Accession: MIMAT0052279
• Description: Pan troglodytes ptr-miR-125a-5p mature miRNA
• Sequence: 14 - UCCCUGAGACCCUUUAACCUGU - 35
• Evidence: not_experimental

Mature ptr-miR-125a-3p

• Accession: MIMAT0007984
• Description: Pan troglodytes ptr-miR-125a-3p mature miRNA
• Sequence: 52 - ACAGGUGAGGUUCUUGGGAGC - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70