Stem-loop ptr-mir-126

Accession

MI0008465

Description

Pan troglodytes ptr-mir-126 precursor miRNA

Literature search

6 open access papers mention ptr-mir-126
(28 sentences)

Sequence

12114 reads, 104.0 reads per million, 24 experiments

gcuggcgacgggaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacuCGUACCGUGAGUAAUAAUGCGccguccacggca
((((..(((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..)))))..)))).

Structure

-    gc     ga           U       CGcug   c 
 gcug  gacgg  CAUUAUUACUU UGGUACG     uga a
 ||||  |||||  ||||||||||| |||||||     |||  
 cggc  cugcc  GUAAUAAUGAG GCCAUGC     acu c
a    ac     GC           U       -ucaa   u 

Annotation confidence High

Genome context

chr9: 115054266-115054349 [+]

Mature ptr-miR-126-5p

• Accession: MIMAT0052280
• Description: Pan troglodytes ptr-miR-126-5p mature miRNA
• Sequence: 14 - CAUUAUUACUUUUGGUACGCG - 34
• Evidence: not_experimental

Mature ptr-miR-126-3p

• Accession: MIMAT0007985
• Description: Pan troglodytes ptr-miR-126-3p mature miRNA
• Sequence: 52 - CGUACCGUGAGUAAUAAUGCG - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70