Stem-loop ptr-mir-1271

Accession

MI0008472

Description

Pan troglodytes ptr-mir-1271 precursor miRNA

Sequence

1223 reads, 12.0 reads per million, 24 experiments

acccagaucagugCUUGGCACCUAGCAAGCACUCAguaaauacuuguugAGUGCCUGCUAUGUGCCAGGCAuugugcugaggguu
.(((((..(((((((((((((.(((((.(((((((((((....))))))))))).))))).)))))))))))))..))).))...

Structure

--a  -   au             C     A           a 
   cc cag  cagugCUUGGCAC UAGCA GCACUCAguaa u
   || |||  ||||||||||||| ||||| |||||||||||  
   gg guc  guuACGGACCGUG AUCGU CGUGAguuguu a
uug  a   gu             U     C           c 

Annotation confidence High

Genome context

chr5: 177008904-177008988 [+]

Mature ptr-miR-1271-5p

• Accession: MIMAT0007992
• Description: Pan troglodytes ptr-miR-1271-5p mature miRNA
• Sequence: 14 - CUUGGCACCUAGCAAGCACUCA - 35
• Evidence: not_experimental

Mature ptr-miR-1271-3p

• Accession: MIMAT0052281
• Description: Pan troglodytes ptr-miR-1271-3p mature miRNA
• Sequence: 50 - AGUGCCUGCUAUGUGCCAGGCA - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70