miRBase entry: ptr-mir-1298

Stem-loop ptr-mir-1298


Accession
MI0008502
Description
Pan troglodytes ptr-mir-1298 precursor miRNA


Sequence

175 reads, 3.0 reads per million, 14 experiments
gacgaggaguuaagagUUCAUUCGGCUGUCCAGAUGUAUCcaaguacccuguguuauuuggcaauaaauaCAUCUGGGCAACUGACUGAAcuuuucacuuuucaugacuca
...(((((((.(((((((((.((((.((((((((((((((((((((........)))))))......))))))))))))).)))).))))))))).)))))))........

Structure
-----gac       u         U    C             ------       ccc 
        gaggagu aagagUUCA UCGG UGUCCAGAUGUAU      Ccaagua   u
        ||||||| ||||||||| |||| |||||||||||||      |||||||    
        cuuuuca uuuucAAGU AGUC ACGGGUCUACaua      gguuuau   g
acucagua       c         C    A             aauaac       ugu 


Annotation confidence High
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Genome context
chrX: 114412177-114412287 [+]

Database links

Mature ptr-miR-1298-5p

Accession MIMAT0008017
Description Pan troglodytes ptr-miR-1298-5p mature miRNA
Sequence 17 - UUCAUUCGGCUGUCCAGAUGUAUC - 40
Evidence not_experimental

Mature ptr-miR-1298-3p

Accession MIMAT0052285
Description Pan troglodytes ptr-miR-1298-3p mature miRNA
Sequence 71 - CAUCUGGGCAACUGACUGAA - 90
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70