Stem-loop ptr-mir-1307

Accession

MI0008526

Description

Pan troglodytes ptr-mir-1307 precursor miRNA

Sequence

12244 reads, 123.0 reads per million, 24 experiments

caucaagacccagcugagucacugucacugccuaccaaucUCGACCGGACCUCGACCGGCUCgucuguguugccaaucgACUCGGCGUGGCGUCGGUCGUGGUagauaggcggucaugcauacgaauuuucagcucuuguucugguga
(((((.(((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.((((.(((..((......))..))).)))))).))..))))))).))).).))))))))...)))...))...)))))))...))).))))).

Structure

-     a   -cc       ---  -ac   --c        c a   U       -A  U  A    C   uc  ug 
 cauca gac   agcugag   uc   ugu   acugccua c auc CGACCGG  CC CG CCGG UCg  ug  u
 ||||| |||   |||||||   ||   |||   |||||||| | ||| |||||||  || || |||| |||  ||   
 guggu uug   ucgacuu   ag   acg   uggcggau g UGG GCUGGCU  GG GC GGCU Agc  ac  u
a     c   uuc       uua  cau   uac        a a   U       GC  U  -    C   ua  cg 

Annotation confidence High

Genome context

chr10: 104877580-104877727 [-]

Mature ptr-miR-1307-5p

• Accession: MIMAT0052288
• Description: Pan troglodytes ptr-miR-1307-5p mature miRNA
• Sequence: 41 - UCGACCGGACCUCGACCGGCUC - 62
• Evidence: not_experimental

Mature ptr-miR-1307-3p

• Accession: MIMAT0008024
• Description: Pan troglodytes ptr-miR-1307-3p mature miRNA
• Sequence: 80 - ACUCGGCGUGGCGUCGGUCGUGGU - 103
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70