Stem-loop ptr-mir-130b

Accession

MI0008528

Description

Pan troglodytes ptr-mir-130b precursor miRNA

Literature search

5 open access papers mention ptr-mir-130b
(6 sentences)

Sequence

2864 reads, 23.0 reads per million, 24 experiments

gccugcccgacACUCUUUCCCUGUUGCACUACUaugggccgcugggaagCAGUGCAAUGAUGAAAGGGCAUcggucagguc
(((((.((((..(((((((..(((((((((..........(((....))))))))))))..)))))))..)))).))))).

Structure

-     c    cA       CC         ACUaugggcc   g 
 gccug ccga  CUCUUUC  UGUUGCACU          gcu g
 ||||| ||||  |||||||  |||||||||          |||  
 uggac ggcU  GGGAAAG  GUAACGUGA          Cga g
c     u    AC       UA         ----------   a 

Annotation confidence High

Genome context

chr22: 8063089-8063169 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-130b

Mature ptr-miR-130b-5p

• Accession: MIMAT0052289
• Description: Pan troglodytes ptr-miR-130b-5p mature miRNA
• Sequence: 12 - ACUCUUUCCCUGUUGCACUACU - 33
• Evidence: not_experimental

Mature ptr-miR-130b-3p

• Accession: MIMAT0008026
• Description: Pan troglodytes ptr-miR-130b-3p mature miRNA
• Sequence: 50 - CAGUGCAAUGAUGAAAGGGCAU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70