Stem-loop ptr-mir-135a-1

Accession

MI0008536

Description

Pan troglodytes ptr-mir-135a-1 precursor miRNA

Sequence

850 reads, 12.0 reads per million, 21 experiments

aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucacucAUAUAGGGAUUGGAGCCGUGGCgcacggcggggac
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))..

Structure

agg         u u          UU            uucua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g GGUGCCGAGG  UAGGGAUAUAcu     g
-ca         c C          -U            cacuc 

Annotation confidence High

Genome context

chr3: 53408178-53408266 [-]

Mature ptr-miR-135a-5p

• Accession: MIMAT0002252
• Description: Pan troglodytes ptr-miR-135a-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: not_experimental

Mature ptr-miR-135a-1-3p

• Accession: MIMAT0052195
• Description: Pan troglodytes ptr-miR-135a-1-3p mature miRNA
• Sequence: 55 - AUAUAGGGAUUGGAGCCGUGGC - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70