Stem-loop ptr-mir-135b

Accession

MI0008537

Description

Pan troglodytes ptr-mir-135b precursor miRNA

Literature search

1 open access papers mention ptr-mir-135b
(1 sentences)

Sequence

150 reads, 11.0 reads per million, 13 experiments

cacucugcuguggccUAUGGCUUUUCAUUCCUAUGUGAUugcugucccaaacucAUGUAGGGCUAAAAGCCAUGGGcuacagugaggggcgagcuc
..(((((((((((((((((((((((...(((((((((((((......)))..))))))))))..))))))))))))))))))).))))........

Structure

------ca    -                   CAU          --   cu 
        cucu gcuguggccUAUGGCUUUU   UCCUAUGUGA  Uug  g
        |||| |||||||||||||||||||   ||||||||||  |||   
        ggga ugacaucGGGUACCGAAAA   GGGAUGUAcu  aac  u
cucgagcg    g                   -UC          ca   cc 

Annotation confidence High

Genome context

chr1: 184346362-184346457 [-]

Mature ptr-miR-135b-5p

• Accession: MIMAT0008032
• Description: Pan troglodytes ptr-miR-135b-5p mature miRNA
• Sequence: 16 - UAUGGCUUUUCAUUCCUAUGUGAU - 39
• Evidence: not_experimental

Mature ptr-miR-135b-3p

• Accession: MIMAT0052290
• Description: Pan troglodytes ptr-miR-135b-3p mature miRNA
• Sequence: 55 - AUGUAGGGCUAAAAGCCAUGGG - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70