Stem-loop ptr-mir-138

Accession

MI0008539

Description

Pan troglodytes ptr-mir-138 precursor miRNA

Literature search

3 open access papers mention ptr-mir-138
(3 sentences)

Sequence

24969 reads, 199.0 reads per million, 22 experiments

guugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccgGCUAUUUCACGACACCAGGGUUgcauca
(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure

- u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg UG  GACCACAGCACUU   UCGgc   uuc uc  a
a u   U  -G             -UA     cca   -  cu 

Annotation confidence High

Genome context

chr16: 47522373-47522455 [+]

Mature ptr-miR-138-5p

• Accession: MIMAT0008034
• Description: Pan troglodytes ptr-miR-138-5p mature miRNA
• Sequence: 9 - AGCUGGUGUUGUGAAUCAGGCCG - 31
• Evidence: not_experimental

Mature ptr-miR-138-3p

• Accession: MIMAT0052292
• Description: Pan troglodytes ptr-miR-138-3p mature miRNA
• Sequence: 56 - GCUAUUUCACGACACCAGGGUU - 77
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70