Stem-loop ptr-mir-139

Accession

MI0008540

Description

Pan troglodytes ptr-mir-139 precursor miRNA

Literature search

4 open access papers mention ptr-mir-139
(4 sentences)

Sequence

42681 reads, 324.0 reads per million, 24 experiments

guguauUCUACAGUGCACGUGUCUCCAGUguggcucggaggcUGGAGACGCGGCCCUGUUGGAGUaa
...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).))))))).

Structure

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGU u  c
   ||||||| ||| || |||||||||||| |  u
   aUGAGGU GUC CG GCGCAGAGGUcg a  c
--a       U   C  -            g gg 

Annotation confidence High

Genome context

chr11: 72535754-72535820 [-]

Mature ptr-miR-139-5p

• Accession: MIMAT0052293
• Description: Pan troglodytes ptr-miR-139-5p mature miRNA
• Sequence: 7 - UCUACAGUGCACGUGUCUCCAGU - 29
• Evidence: not_experimental

Mature ptr-miR-139-3p

• Accession: MIMAT0008035
• Description: Pan troglodytes ptr-miR-139-3p mature miRNA
• Sequence: 43 - UGGAGACGCGGCCCUGUUGGAGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70