Stem-loop ptr-mir-142

Accession

MI0008543

Description

Pan troglodytes ptr-mir-142 precursor miRNA

Literature search

6 open access papers mention ptr-mir-142
(17 sentences)

Sequence

8638 reads, 74.0 reads per million, 24 experiments

gacagugcagucaCCCAUAAAGUAGAAAGCACUAcuaacagcacuggaggguGUAGUGUUUCCUACUUUAUGGAUgaguguacugu
.((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))))))

Structure

g        g   C           A         uaa ag a 
 acagugca uca CCAUAAAGUAG AAGCACUAc   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu agU GGUAUUUCAUC UUUGUGAUG   g  g u
-        g   A           C         -ug ga g 

Annotation confidence High

Genome context

chr17: 57615879-57615964 [-]

Mature ptr-miR-142-5p

• Accession: MIMAT0052294
• Description: Pan troglodytes ptr-miR-142-5p mature miRNA
• Sequence: 14 - CCCAUAAAGUAGAAAGCACUA - 34
• Evidence: not_experimental

Mature ptr-miR-142-3p

• Accession: MIMAT0008037
• Description: Pan troglodytes ptr-miR-142-3p mature miRNA
• Sequence: 53 - GUAGUGUUUCCUACUUUAUGGAU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70