Stem-loop ptr-mir-146b

Accession

MI0008545

Description

Pan troglodytes ptr-mir-146b precursor miRNA

Literature search

1 open access papers mention ptr-mir-146b
(3 sentences)

Sequence

139073 reads, 1357.0 reads per million, 24 experiments

cuggcacUGAGAACUGAAUUCCAUAGGCUGugagcucuagcaauGCCCUGUGGACUCAGUUCUGGUgcccgg
..((((((.((((((((..(((((((((..((........))..).)))))))).))))))))))))))...

Structure

-cu      G        AU        - UG  agc 
   ggcacU AGAACUGA  UCCAUAGG C  ug   u
   |||||| ||||||||  |||||||| |  ||    
   ccgUGG UCUUGACU  AGGUGUCC G  ac   c
ggc      -        -C        C ua  gau 

Annotation confidence High

Genome context

chr10: 103890510-103890581 [+]

Mature ptr-miR-146b-5p

• Accession: MIMAT0008039
• Description: Pan troglodytes ptr-miR-146b-5p mature miRNA
• Sequence: 8 - UGAGAACUGAAUUCCAUAGGCUG - 30
• Evidence: not_experimental

Mature ptr-miR-146b-3p

• Accession: MIMAT0052295
• Description: Pan troglodytes ptr-miR-146b-3p mature miRNA
• Sequence: 45 - GCCCUGUGGACUCAGUUCUGGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70