Stem-loop ptr-mir-148a

Accession

MI0008547

Description

Pan troglodytes ptr-mir-148a precursor miRNA

Literature search

5 open access papers mention ptr-mir-148a
(12 sentences)

Sequence

29308 reads, 246.0 reads per million, 24 experiments

gaggcAAAGUUCUGAGACACUCCGACUcugaguaugauagaagUCAGUGCACUACAGAACUUUGUcu
.(((((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))))))

Structure

g             -  -A    CC    -   ag 
 aggcAAAGUUCUG AG  CACU  GACU cug  u
 ||||||||||||| ||  ||||  |||| |||  a
 ucUGUUUCAAGAC UC  GUGA  CUga gau  u
-             A  AC    --    a   ag 

Annotation confidence High

Genome context

chr7: 25118495-25118561 [-]

Mature ptr-miR-148a-5p

• Accession: MIMAT0052296
• Description: Pan troglodytes ptr-miR-148a-5p mature miRNA
• Sequence: 6 - AAAGUUCUGAGACACUCCGACU - 27
• Evidence: not_experimental

Mature ptr-miR-148a-3p

• Accession: MIMAT0008041
• Description: Pan troglodytes ptr-miR-148a-3p mature miRNA
• Sequence: 44 - UCAGUGCACUACAGAACUUUGU - 65
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70