Stem-loop ptr-mir-148b

Accession

MI0008548

Description

Pan troglodytes ptr-mir-148b precursor miRNA

Literature search

1 open access papers mention ptr-mir-148b
(4 sentences)

Sequence

20078 reads, 189.0 reads per million, 24 experiments

caagcacgauuagcauuugagguGAAGUUCUGUUAUACACUCAGGCUguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucu
.......((..(((.((((((((((((((((((.((.((((..((((.............)))))))).)).)))))))))))))))))).))).)).

Structure

caagcac  uu   a                  U  A    CA    guggc 
       ga  agc uuugagguGAAGUUCUGU AU CACU  GGCU     u
       ||  ||| |||||||||||||||||| || ||||  ||||     c
       cu  ucg aagcucUGUUUCAAGACA UA GUGA  CUga     u
------u  -u   a                  C  C    --    aaguc 

Annotation confidence High

Genome context

chr12: 35406209-35406306 [-]

Mature ptr-miR-148b-5p

• Accession: MIMAT0052297
• Description: Pan troglodytes ptr-miR-148b-5p mature miRNA
• Sequence: 24 - GAAGUUCUGUUAUACACUCAGGCU - 47
• Evidence: not_experimental

Mature ptr-miR-148b-3p

• Accession: MIMAT0008042
• Description: Pan troglodytes ptr-miR-148b-3p mature miRNA
• Sequence: 63 - UCAGUGCAUCACAGAACUUUGU - 84
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70