Stem-loop ptr-mir-149

Accession

MI0008549

Description

Pan troglodytes ptr-mir-149 precursor miRNA

Literature search

3 open access papers mention ptr-mir-149
(4 sentences)

Sequence

810 reads, 9.0 reads per million, 18 experiments

ccggcgcccgagcUCUGGCUCCGUGUCUUCACUCCCgugcuuguccgaggaggGAGGGAGGGACGGGGGCUGUGCUggggc
.....((((.(((.(.(.((((((.(((((.(((((.(.(((....))).))))))))))).)))))).).).))).))))

Structure

ccggc    g   U U G      G     A     g g   g 
     gccc agc C G CUCCGU UCUUC CUCCC u cuu u
     |||| ||| | | |||||| ||||| ||||| | |||  
     cggg UCG G C GGGGCA GGAGG GAGgg a gag c
-----    g   U U G      G     -     - g   c 

Annotation confidence High

Genome context

chr2B: 131620734-131620814 [+]

Mature ptr-miR-149-5p

• Accession: MIMAT0008043
• Description: Pan troglodytes ptr-miR-149-5p mature miRNA
• Sequence: 14 - UCUGGCUCCGUGUCUUCACUCCC - 36
• Evidence: not_experimental

Mature ptr-miR-149-3p

• Accession: MIMAT0052298
• Description: Pan troglodytes ptr-miR-149-3p mature miRNA
• Sequence: 54 - GAGGGAGGGACGGGGGCUGUGCU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70