Stem-loop ptr-mir-150

Accession

MI0008550

Description

Pan troglodytes ptr-mir-150 precursor miRNA

Literature search

5 open access papers mention ptr-mir-150
(7 sentences)

Sequence

414 reads, 3.0 reads per million, 23 experiments

cuccccauggcccugUCUCCCAACCCUUGUACCAGUGcugggcucagaccCUGGUACAGGCCUGGGGGACAgggaccugggga
.((((((.((((((((((((((..(((.(((((((.((((....))).).))))))))))..)))))))))))).))))))))

Structure

c      u  -            AC   U       U -   g 
 ucccca gg cccugUCUCCCA  CCU GUACCAG G cug g
 |||||| || ||||||||||||  ||| ||||||| | |||  
 aggggu cc gggACAGGGGGU  GGA CAUGGUC c gac c
-      -  a            CC   -       c a   u 

Annotation confidence High

Genome context

chr19: 51722189-51722271 [-]

Mature ptr-miR-150-5p

• Accession: MIMAT0008044
• Description: Pan troglodytes ptr-miR-150-5p mature miRNA
• Sequence: 16 - UCUCCCAACCCUUGUACCAGUG - 37
• Evidence: not_experimental

Mature ptr-miR-150-3p

• Accession: MIMAT0052299
• Description: Pan troglodytes ptr-miR-150-3p mature miRNA
• Sequence: 51 - CUGGUACAGGCCUGGGGGACA - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70