Stem-loop ptr-mir-153

Accession

MI0008553

Description

Pan troglodytes ptr-mir-153 precursor miRNA

Literature search

2 open access papers mention ptr-mir-153
(2 sentences)

Sequence

528 reads, 6.0 reads per million, 16 experiments

agcgguggccaguGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCAUuggaaacugu
.(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..)))))

Structure

a     gg      -             GU       -a  aa 
 gcggu  ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguUAC AGUGAAAACACUG  ACGUUga  cg  u
-     aa      U             AU       cc  ag 

Annotation confidence High

Genome context

chr7: 161791994-161792079 [-]

Mature ptr-miR-153-5p

• Accession: MIMAT0052301
• Description: Pan troglodytes ptr-miR-153-5p mature miRNA
• Sequence: 14 - GUCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: not_experimental

Mature ptr-miR-153-3p

• Accession: MIMAT0008047
• Description: Pan troglodytes ptr-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGAUCAU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70