miRBase entry: ptr-mir-181d

Stem-loop ptr-mir-181d


Accession
MI0008557
Description
Pan troglodytes ptr-mir-181d precursor miRNA


Sequence

uccccuccccuaggccacagccgaggucacaaucAACAUUCAUUGUUGUCGGUGGGUugugaggaccgaggccagacccaccgggggaugaaugucacuguggcugggccagacacggcuuaaggggaauggggac
((((((((((((((((...(((..(((((((....(((((((((....((((((((((.((.(........)))))))))))))..)))))))))...))))))).))).......))))).))))))..))))).

Structure
-     --      -     ----aca   ga       aucA         GUUG          g  a gac 
 ucccc  uccccu aggcc       gcc  ggucaca    ACAUUCAUU    UCGGUGGGUu ug g   c
 |||||  |||||| |||||       |||  |||||||    |||||||||    |||||||||| || |    
 agggg  agggga uucgg       cgg  ucggugu    uguaaguag    ggccacccag ac c   g
c     ua      a     cacagac   -g       -cac         --gg          -  - gga 


Annotation confidence Not enough data
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Genome context
chr19: 14620993-14621128 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-181d

Accession MIMAT0008049
Description Pan troglodytes ptr-miR-181d mature miRNA
Sequence 35 - AACAUUCAUUGUUGUCGGUGGGU - 57
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70