Stem-loop ptr-mir-181d

Accession

MI0008557

Description

Pan troglodytes ptr-mir-181d precursor miRNA

Literature search

1 open access papers mention ptr-mir-181d
(1 sentences)

Sequence

74978 reads, 573.0 reads per million, 24 experiments

uccccuccccuaggccacagccgaggucacaaucAACAUUCAUUGUUGUCGGUGGGUUgugaggaccgaggccagacCCACCGGGGGAUGAAUGUCAcuguggcugggccagacacggcuuaaggggaauggggac
((((((((((((((((...(((..(((((((....(((((((((....((((((((((.((.(........)))))))))))))..)))))))))...))))))).))).......))))).))))))..))))).

Structure

-     --      -     ----aca   ga       aucA         GUUG          g  a gac 
 ucccc  uccccu aggcc       gcc  ggucaca    ACAUUCAUU    UCGGUGGGUU ug g   c
 |||||  |||||| |||||       |||  |||||||    |||||||||    |||||||||| || |    
 agggg  agggga uucgg       cgg  ucggugu    UGUAAGUAG    GGCCACCcag ac c   g
c     ua      a     cacagac   -g       -cAC         --GG          -  - gga 

Annotation confidence High

Genome context

chr19: 14620993-14621128 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-181d

Mature ptr-miR-181d-5p

• Accession: MIMAT0008049
• Description: Pan troglodytes ptr-miR-181d-5p mature miRNA
• Sequence: 35 - AACAUUCAUUGUUGUCGGUGGGUU - 58
• Evidence: not_experimental

Mature ptr-miR-181d-3p

• Accession: MIMAT0052304
• Description: Pan troglodytes ptr-miR-181d-3p mature miRNA
• Sequence: 78 - CCACCGGGGGAUGAAUGUCA - 97
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70