Stem-loop ptr-mir-191

Accession

MI0008564

Description

Pan troglodytes ptr-mir-191 precursor miRNA

Literature search

3 open access papers mention ptr-mir-191
(18 sentences)

Sequence

160346 reads, 2659.0 reads per million, 24 experiments

cggcuggacagcgggCAACGGAAUCCCAAAAGCAGCUGUugucuccagagcauuccagCUGCGCUUGGAUUUCGUCCCCUgcucuccugcc
.(((.(((.((((((..(((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))..)))))).))).)))

Structure

c   u   c      CA         C  AA       --U   cu 
 ggc gga agcggg  ACGGAAUCC AA  GCAGCUG   ugu  c
 ||| ||| ||||||  ||||||||| ||  |||||||   |||  c
 ccg ccu ucgUCC  UGCUUUAGG UU  CGUCgac   acg  a
-   u   c      CC         -  CG       cuu   ag 

Annotation confidence High

Genome context

chr3: 50084686-50084776 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-191

Mature ptr-miR-191-5p

• Accession: MIMAT0008056
• Description: Pan troglodytes ptr-miR-191-5p mature miRNA
• Sequence: 16 - CAACGGAAUCCCAAAAGCAGCUGU - 39
• Evidence: not_experimental

Mature ptr-miR-191-3p

• Accession: MIMAT0052306
• Description: Pan troglodytes ptr-miR-191-3p mature miRNA
• Sequence: 59 - CUGCGCUUGGAUUUCGUCCCCU - 80
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70