Stem-loop ptr-mir-192

Accession

MI0008565

Description

Pan troglodytes ptr-mir-192 precursor miRNA

Literature search

4 open access papers mention ptr-mir-192
(5 sentences)

Sequence

2801709 reads, 19877.0 reads per million, 24 experiments

gccgagaccgagugcacagggcuCUGACCUAUGAAUUGACAGCCAgugcucucgucuccccucuggCUGCCAAUUCCAUAGGUCACAGguauguucgccucaaugccag
.........(((.(((((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).)))..)))))........

Structure

gccgagacc   u  --   g g  C         -     A       ugcucuc 
         gag gc  aca g cu UGACCUAUG AAUUG CAGCCAg       g
         ||| ||  ||| | || ||||||||| ||||| |||||||        
         cuc cg  ugu u GA ACUGGAUAC UUAAC GUCgguc       u
-gaccguaa   -  cu   a g  C         C     C       uccccuc 

Annotation confidence High

Genome context

chr11: 64925467-64925575 [-]

Mature ptr-miR-192-5p

• Accession: MIMAT0008057
• Description: Pan troglodytes ptr-miR-192-5p mature miRNA
• Sequence: 24 - CUGACCUAUGAAUUGACAGCCA - 45
• Evidence: not_experimental

Mature ptr-miR-192-3p

• Accession: MIMAT0052307
• Description: Pan troglodytes ptr-miR-192-3p mature miRNA
• Sequence: 67 - CUGCCAAUUCCAUAGGUCACAG - 88
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70