Stem-loop ptr-mir-193a

Accession

MI0008566

Description

Pan troglodytes ptr-mir-193a precursor miRNA

Literature search

4 open access papers mention ptr-mir-193a
(12 sentences)

Sequence

3464 reads, 32.0 reads per million, 24 experiments

cgaggaugggagcugagggcUGGGUCUUUGCGGGCGAGAUGAgggugucggaucAACUGGCCUACAAAGUCCCAGUUCucggccccc
.......(((.(((((((((((((.(((((.((((.((.(((..........))).)).)))).))))).)))))))))))))))).

Structure

cgaggau   a             U     C    G  A   gggu 
       ggg gcugagggcUGGG CUUUG GGGC AG UGA    g
       ||| ||||||||||||| ||||| |||| || |||     
       ccc cggcuCUUGACCC GAAAC UCCG UC Acu    u
------c   -             U     A    G  A   aggc 

Annotation confidence High

Genome context

chr17: 25947439-25947525 [-]

Mature ptr-miR-193a-5p

• Accession: MIMAT0052308
• Description: Pan troglodytes ptr-miR-193a-5p mature miRNA
• Sequence: 21 - UGGGUCUUUGCGGGCGAGAUGA - 42
• Evidence: not_experimental

Mature ptr-miR-193a-3p

• Accession: MIMAT0008058
• Description: Pan troglodytes ptr-miR-193a-3p mature miRNA
• Sequence: 55 - AACUGGCCUACAAAGUCCCAGUUC - 78
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70