Stem-loop ptr-mir-193b

Accession

MI0008567

Description

Pan troglodytes ptr-mir-193b precursor miRNA

Literature search

1 open access papers mention ptr-mir-193b
(1 sentences)

Sequence

13606 reads, 122.0 reads per million, 24 experiments

uggucucagaauCGGGGUUUUGAGGGCGAGAUGAguuuauguuuuauccAACUGGCCCUCAAAGUCCCGCUUuuggggucau
(((((((((((.(((((((((((((((.((.((.((.........)).)).)).))))))))))))))).))))))))))).

Structure

-           u               G  A  A  uua 
 uggucucagaa CGGGGUUUUGAGGGC AG UG gu   u
 ||||||||||| ||||||||||||||| || || ||   g
 acugggguuUU GCCCUGAAACUCCCG UC Ac ua   u
u           C               G  A  c  uuu 

Annotation confidence High

Genome context

chr16: 14751623-14751704 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-193b

Mature ptr-miR-193b-5p

• Accession: MIMAT0052309
• Description: Pan troglodytes ptr-miR-193b-5p mature miRNA
• Sequence: 13 - CGGGGUUUUGAGGGCGAGAUGA - 34
• Evidence: not_experimental

Mature ptr-miR-193b-3p

• Accession: MIMAT0008059
• Description: Pan troglodytes ptr-miR-193b-3p mature miRNA
• Sequence: 50 - AACUGGCCCUCAAAGUCCCGCUU - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70