Stem-loop ptr-mir-195

Accession

MI0008568

Description

Pan troglodytes ptr-mir-195 precursor miRNA

Literature search

3 open access papers mention ptr-mir-195
(20 sentences)

Sequence

8595 reads, 120.0 reads per million, 24 experiments

agcuucccuggcucUAGCAGCACAGAAAUAUUGGCacagggaagcgagucugccaauauuggcugugcugcuccaggcaggguggu
.(((.(((((.((..((((((((((.((((((((((..((........))))))))))))..))))))))))..)).))))).)))

Structure

a   u     g  cU          -A          ca  gaa 
 gcu cccug cu  AGCAGCACAG  AAUAUUGGCa  gg   g
 ||| ||||| ||  ||||||||||  ||||||||||  ||    
 ugg gggac ga  ucgucguguc  uuauaaccgu  cu   c
-   u     g  cc          gg          --  gag 

Annotation confidence Not enough data

Genome context

chr17: 7272655-7272740 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-195

Mature ptr-miR-195-5p

• Accession: MIMAT0008060
• Description: Pan troglodytes ptr-miR-195-5p mature miRNA
• Sequence: 15 - UAGCAGCACAGAAAUAUUGGC - 35
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70