Stem-loop ptr-mir-196b

Accession

MI0008570

Description

Pan troglodytes ptr-mir-196b precursor miRNA

Literature search

4 open access papers mention ptr-mir-196b
(6 sentences)

Sequence

947 reads, 19.0 reads per million, 9 experiments

acuggucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucUCGACAGCACGACACUGCCUUCauuacuucaguu
(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))).

Structure

-     uc      uU       U  C           ucca 
 acugg  ggugau  AGGUAGU UC UGUUGUUGGGa    c
 |||||  ||||||  ||||||| || |||||||||||     
 ugacu  ucauua  UCCGUCA AG ACGACAGCUcu    c
u     --      CU       C  C           cuuu 

Annotation confidence High

Genome context

chr7: 26344249-26344331 [-]

Mature ptr-miR-196b-5p

• Accession: MIMAT0008061
• Description: Pan troglodytes ptr-miR-196b-5p mature miRNA
• Sequence: 15 - UAGGUAGUUUCCUGUUGUUGGG - 36
• Evidence: not_experimental

Mature ptr-miR-196b-3p

• Accession: MIMAT0052310
• Description: Pan troglodytes ptr-miR-196b-3p mature miRNA
• Sequence: 50 - UCGACAGCACGACACUGCCUUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70