Stem-loop ptr-mir-208b

Accession

MI0008578

Description

Pan troglodytes ptr-mir-208b precursor miRNA

Literature search

1 open access papers mention ptr-mir-208b
(3 sentences)

Sequence

3110 reads, 51.0 reads per million, 10 experiments

ccucucagggAAGCUUUUUGCUCGAAUUAUGUUucugauccgaauAUAAGACGAACAAAAGGUUUGUCugagggca
.((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).))))))))..

Structure

-c        g          C   AA        cu 
  cucucagg AAGCUUUUUG UCG  UUAUGUUu  g
  |||||||| |||||||||| |||  ||||||||  a
  gggaguCU UUUGGAAAAC AGC  AAUAuaag  u
ac        G          A   AG        cc 

Annotation confidence High

Genome context

chr14: 7166298-7166373 [-]

Mature ptr-miR-208b-5p

• Accession: MIMAT0052314
• Description: Pan troglodytes ptr-miR-208b-5p mature miRNA
• Sequence: 11 - AAGCUUUUUGCUCGAAUUAUGUU - 33
• Evidence: not_experimental

Mature ptr-miR-208b-3p

• Accession: MIMAT0008068
• Description: Pan troglodytes ptr-miR-208b-3p mature miRNA
• Sequence: 46 - AUAAGACGAACAAAAGGUUUGUC - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70