Stem-loop ptr-mir-221

Accession

MI0008587

Description

Pan troglodytes ptr-mir-221 precursor miRNA

Literature search

14 open access papers mention ptr-mir-221
(28 sentences)

Sequence

262173 reads, 1917.0 reads per million, 24 experiments

ugaacauccaggucuggggcaugaACCUGGCAUACAAUGUAGAUUUcuguguucguuaggcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccuggaaacauguucu
.((((((((((((....(((.(((((((((((.(((((((((....(((((((.....))).))))))))))))).))))))).)))).))))))))))....))))).

Structure

u     ----       cugg   a    -       U         AUUU    -   c 
 gaaca    uccaggu    ggc ugaA CCUGGCA ACAAUGUAG    cugu guu g
 |||||    |||||||    ||| |||| ||||||| |||||||||    |||| ||| u
 cuugu    aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca cgg u
u     acaa       ----   g    U       C         ----    a   a 

Annotation confidence High

Genome context

chrX: 45931544-45931652 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-221

Mature ptr-miR-221-5p

• Accession: MIMAT0052317
• Description: Pan troglodytes ptr-miR-221-5p mature miRNA
• Sequence: 25 - ACCUGGCAUACAAUGUAGAUUU - 46
• Evidence: not_experimental

Mature ptr-miR-221-3p

• Accession: MIMAT0008076
• Description: Pan troglodytes ptr-miR-221-3p mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUU - 86
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70