Stem-loop ptr-mir-24-1

Accession

MI0008588

Description

Pan troglodytes ptr-mir-24-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-24-1
(15 sentences)

Sequence

101476 reads, 904.0 reads per million, 24 experiments

uccgGUGCCUACUGAGCUGAUAUCAguucucauuuuacacacUGGCUCAGUUCAGCAGGAACAGgag
(((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))).

Structure

-   g  G   A         UA     ucuca 
 ucc GU CCU CUGAGCUGA  UCAgu     u
 ||| || ||| |||||||||  |||||     u
 agG CA GGA GACUUGACU  GGUca     u
g   A  A   C         -C     cacau 

Annotation confidence High

Genome context

chr9: 72784548-72784614 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-24-1

Mature ptr-miR-24-1-5p

• Accession: MIMAT0052249
• Description: Pan troglodytes ptr-miR-24-1-5p mature miRNA
• Sequence: 5 - GUGCCUACUGAGCUGAUAUCA - 25
• Evidence: not_experimental

Mature ptr-miR-24-3p

• Accession: MIMAT0002751
• Description: Pan troglodytes ptr-miR-24-3p mature miRNA
• Sequence: 43 - UGGCUCAGUUCAGCAGGAACAG - 64
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70