Stem-loop ptr-mir-27b

Accession

MI0008591

Description

Pan troglodytes ptr-mir-27b precursor miRNA

Literature search

4 open access papers mention ptr-mir-27b
(7 sentences)

Sequence

44416 reads, 370.0 reads per million, 24 experiments

ccucucuaacaaggugcAGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggug
(((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))..

Structure

--   -    aaca                 G    G       ugau   u 
  ccu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
  ||| ||||    ||||||||||||||||| |||| |||||||    ||| u
  gga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
gu   a    --ag                 -    -       --uc   u 

Annotation confidence High

Genome context

chr9: 72783972-72784067 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-27b

Mature ptr-miR-27b-5p

• Accession: MIMAT0052318
• Description: Pan troglodytes ptr-miR-27b-5p mature miRNA
• Sequence: 18 - AGAGCUUAGCUGAUUGGUGAACA - 40
• Evidence: not_experimental

Mature ptr-miR-27b-3p

• Accession: MIMAT0008078
• Description: Pan troglodytes ptr-miR-27b-3p mature miRNA
• Sequence: 60 - UUCACAGUGGCUAAGUUCUGC - 80
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70