Stem-loop ptr-mir-29c

Accession

MI0008595

Description

Pan troglodytes ptr-mir-29c precursor miRNA

Literature search

3 open access papers mention ptr-mir-29c
(4 sentences)

Sequence

73358 reads, 682.0 reads per million, 24 experiments

aucucuuacacaggcUGACCGAUUUCUCCUGGUGUUcagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggg
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))).

Structure

au        -  ggc           UCC       c   gucu 
  cucuuaca ca   UGACCGAUUUC   UGGUGUU aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
-g        a  ---           UUU       -   guuu 

Annotation confidence Medium

Genome context

chr1: 186692183-186692269 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-29c

Mature ptr-miR-29c-5p

• Accession: MIMAT0052320
• Description: Pan troglodytes ptr-miR-29c-5p mature miRNA
• Sequence: 16 - UGACCGAUUUCUCCUGGUGUU - 36
• Evidence: not_experimental

Mature ptr-miR-29c-3p

• Accession: MIMAT0008082
• Description: Pan troglodytes ptr-miR-29c-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70