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miRBase entry: ptr-mir-302f
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-302f
Accession
MI0008604
Description
Pan troglodytes
ptr-mir-302f precursor miRNA
Sequence
cuauguaaaccuggcaauuuucgcuUAAUUGCUUCCAUGUUUauaaaaga
...(((((((..(((((((.......))))))).....))))))).....
Structure
--cua ---cu uu uguaaac ggcaauu c ||||||| ||||||| g auaUUUG UCGUUAA c agaaa UACCU Uu
Annotation confidence
Not enough data
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Genome context
chr18: 27369857-27369906 [+]
Database links
Mature
ptr-miR-302f
Accession
MIMAT0008091
Description
Pan troglodytes
ptr-miR-302f mature miRNA
Sequence
26 - UAAUUGCUUCCAUGUUU - 42
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70