Stem-loop ptr-mir-30c-1

Accession

MI0008605

Description

Pan troglodytes ptr-mir-30c-1 precursor miRNA

Literature search

2 open access papers mention ptr-mir-30c-1
(2 sentences)

Sequence

12924 reads, 105.0 reads per million, 24 experiments

ccaugcuguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCcuucugccaugga
(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure

-     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
a     --    uuc U       U   --A         ----   a 

Annotation confidence High

Genome context

chr1: 40188188-40188275 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-30c-1

Mature ptr-miR-30c-5p

• Accession: MIMAT0002614
• Description: Pan troglodytes ptr-miR-30c-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCUCAGCU - 39
• Evidence: not_experimental

Mature ptr-miR-30c-1-3p

• Accession: MIMAT0052238
• Description: Pan troglodytes ptr-miR-30c-1-3p mature miRNA
• Sequence: 55 - CUGGGAGAGGGUUGUUUACUC - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70