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miRBase entry: ptr-mir-320d-1
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-320d-1
Accession
MI0008612
Description
Pan troglodytes
ptr-mir-320d-1 precursor miRNA
Sequence
uucucgucccaguucuucccaaaguugagAAAAGCUGGGUUGAGAGG
((((((.(((((((.(((.((....)).))).))))))).)))))).
Structure
- u c c a uucucg cccaguu uuc ca a |||||| ||||||| ||| || GAGAGU GGGUCGA AAg gu g G U A a u
Annotation confidence
Not enough data
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Genome context
chr13: 25557760-25557806 [-]
Database links
Mature
ptr-miR-320d
Accession
MIMAT0008096
Description
Pan troglodytes
ptr-miR-320d mature miRNA
Sequence
30 - AAAAGCUGGGUUGAGAGG - 47
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70