miRBase entry: ptr-mir-329-1

Stem-loop ptr-mir-329-1


Accession
MI0008619
Description
Pan troglodytes ptr-mir-329-1 precursor miRNA


Sequence

1355 reads, 11.0 reads per million, 21 experiments
guaccugaagAGAGGUUUUCUGGGUUUCUGUUUcuuuaaugaggacgaAACACACCUGGUUAACCUCUUUuccaguauc
((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))).

Structure
-    cu           UU      UUC      u  aa 
 guac  gaagAGAGGUU  CUGGGU   UGUUUc uu  u
 ||||  |||||||||||  ||||||   |||||| ||   
 uaug  cuUUUCUCCAA  GGUCCA   ACAAag ag  g
c    ac           UU      --C      c  ga 


Annotation confidence High
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Genome context
chr14: 86275292-86275370 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-329-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-329-5p

Accession MIMAT0052325
Description Pan troglodytes ptr-miR-329-5p mature miRNA
Sequence 11 - AGAGGUUUUCUGGGUUUCUGUUU - 33
Evidence not_experimental

Mature ptr-miR-329-3p

Accession MIMAT0008101
Description Pan troglodytes ptr-miR-329-3p mature miRNA
Sequence 49 - AACACACCUGGUUAACCUCUUU - 70
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70