Stem-loop ptr-mir-330

Accession

MI0008621

Description

Pan troglodytes ptr-mir-330 precursor miRNA

Literature search

1 open access papers mention ptr-mir-330
(1 sentences)

Sequence

107562 reads, 802.0 reads per million, 24 experiments

cuuuggcgaucacugccUCUCUGGGCCUGUGUCUUAGGCucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcagcgcucugcc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).)))

Structure

cuuu   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ccg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
----   u  c c           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

chr19: 47754305-47754397 [-]

Mature ptr-miR-330-5p

• Accession: MIMAT0052326
• Description: Pan troglodytes ptr-miR-330-5p mature miRNA
• Sequence: 18 - UCUCUGGGCCUGUGUCUUAGGC - 39
• Evidence: not_experimental

Mature ptr-miR-330-3p

• Accession: MIMAT0008102
• Description: Pan troglodytes ptr-miR-330-3p mature miRNA
• Sequence: 57 - GCAAAGCACACGGCCUGCAGAGA - 79
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70