Stem-loop ptr-mir-331

Accession

MI0008622

Description

Pan troglodytes ptr-mir-331 precursor miRNA

Literature search

2 open access papers mention ptr-mir-331
(2 sentences)

Sequence

7072 reads, 76.0 reads per million, 24 experiments

aguuugguuuuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUcccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaagcuc
...........(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))..

Structure

aguuugguuuu         u        U    U       AUc  agau 
           guuuggguu guUCUAGG AUGG CCCAGGG   cc    c
           ||||||||| |||||||| |||| |||||||   ||    a
           cgaauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
---------cu         c        -    C       --C  acca 

Annotation confidence Medium

Genome context

chr12: 98075152-98075244 [+]

Mature ptr-miR-331-5p

• Accession: MIMAT0052327
• Description: Pan troglodytes ptr-miR-331-5p mature miRNA
• Sequence: 24 - UCUAGGUAUGGUCCCAGGGAU - 44
• Evidence: not_experimental

Mature ptr-miR-331-3p

• Accession: MIMAT0008103
• Description: Pan troglodytes ptr-miR-331-3p mature miRNA
• Sequence: 60 - GCCCCUGGGCCUAUCCUAGAA - 80
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70