Stem-loop ptr-mir-335

Accession

MI0008623

Description

Pan troglodytes ptr-mir-335 precursor miRNA

Literature search

2 open access papers mention ptr-mir-335
(7 sentences)

Sequence

5009 reads, 47.0 reads per million, 24 experiments

guuuugagcgggggUCAAGAGCAAUAACGAAAAAUGUuugucauaaaccgUUUUUCAUUAUUGCUCCUGACcuccucucauuugcuauauuca
....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).............

Structure

---------guuu    c        A         C        U  gu 
             ugag gggggUCA GAGCAAUAA GAAAAAUG uu  c
             |||| |||||||| ||||||||| |||||||| ||   
             acuc ccucCAGU CUCGUUAUU CUUUUUgc aa  a
acuuauaucguuu    u        C         A        c  au 

Annotation confidence High

Genome context

chr7: 135040242-135040334 [+]

Mature ptr-miR-335-5p

• Accession: MIMAT0008104
• Description: Pan troglodytes ptr-miR-335-5p mature miRNA
• Sequence: 15 - UCAAGAGCAAUAACGAAAAAUGU - 37
• Evidence: not_experimental

Mature ptr-miR-335-3p

• Accession: MIMAT0052328
• Description: Pan troglodytes ptr-miR-335-3p mature miRNA
• Sequence: 51 - UUUUUCAUUAUUGCUCCUGAC - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70