Stem-loop ptr-mir-337

Accession

MI0008624

Description

Pan troglodytes ptr-mir-337 precursor miRNA

Literature search

1 open access papers mention ptr-mir-337
(2 sentences)

Sequence

130 reads, 1.0 reads per million, 21 experiments

uagucaguaguugggggguggGAACGGCUUCAUACAGGAGUUgaugcacaguuauccagCUCCUAUAUGAUGCCUUUCUUCauccccuucaa
............((((((((((((.(((.(((((.(((((((((((......))).)))))))).))))).))).))).)))))))))....

Structure

uagucaguaguu         -   C   U     C        -   ca 
            ggggggugg GAA GGC UCAUA AGGAGUUg aug  c
            ||||||||| ||| ||| ||||| |||||||| |||   
            uccccuaCU CUU CCG AGUAU UCCUCgac uau  a
--------aacu         U   U   U     A        c   ug 

Annotation confidence High

Genome context

chr14: 86119486-86119577 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-337

Mature ptr-miR-337-5p

• Accession: MIMAT0052329
• Description: Pan troglodytes ptr-miR-337-5p mature miRNA
• Sequence: 22 - GAACGGCUUCAUACAGGAGUU - 42
• Evidence: not_experimental

Mature ptr-miR-337-3p

• Accession: MIMAT0008105
• Description: Pan troglodytes ptr-miR-337-3p mature miRNA
• Sequence: 60 - CUCCUAUAUGAUGCCUUUCUUC - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70