Stem-loop ptr-mir-338

Accession

MI0008625

Description

Pan troglodytes ptr-mir-338 precursor miRNA

Literature search

2 open access papers mention ptr-mir-338
(3 sentences)

Sequence

3531 reads, 28.0 reads per million, 23 experiments

ucuccAACAAUAUCCUGGUGCUGAGUgaugacucaggcgacUCCAGCAUCAGUGAUUUUGUUGAag
....((((((.(((((((((((((((.............))).))))))))).))).))))))...

Structure

ucuc      U   -         -   gauga 
    cAACAA AUC CUGGUGCUG AGU     c
    |||||| ||| ||||||||| |||     u
    GUUGUU UAG GACUACGAC Uca     c
-gaA      U   U         C   gcgga 

Annotation confidence High

Genome context

chr17: 80830870-80830935 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-338

Mature ptr-miR-338-5p

• Accession: MIMAT0052330
• Description: Pan troglodytes ptr-miR-338-5p mature miRNA
• Sequence: 6 - AACAAUAUCCUGGUGCUGAGU - 26
• Evidence: not_experimental

Mature ptr-miR-338-3p

• Accession: MIMAT0008106
• Description: Pan troglodytes ptr-miR-338-3p mature miRNA
• Sequence: 42 - UCCAGCAUCAGUGAUUUUGUUGA - 64
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70