Stem-loop ptr-mir-339

Accession

MI0008626

Description

Pan troglodytes ptr-mir-339 precursor miRNA

Literature search

1 open access papers mention ptr-mir-339
(1 sentences)

Sequence

5353 reads, 57.0 reads per million, 24 experiments

cggggcggccgcucUCCCUGUCCUCCAGGAGCUCACGUgugccugccugUGAGCGCCUCGACGACAGAGCCAgcgccugccccagugucugcg
.(((((((.((((..(.(((((.((.(((.(((((((.((....)).))))))).))).)).))))).)..)))).)))))))..........

Structure

---------c       c    cU C     C  C   A       U  g 
          ggggcgg cgcu  C CUGUC UC AGG GCUCACG gu c
          ||||||| ||||  | ||||| || ||| ||||||| ||  
          ccccguc gcgA  G GACAG AG UCC CGAGUgu cg c
gcgucuguga       c    CC A     C  C   G       c  u 

Annotation confidence High

Genome context

chr7: 42576-42668 [+]

Mature ptr-miR-339-5p

• Accession: MIMAT0052331
• Description: Pan troglodytes ptr-miR-339-5p mature miRNA
• Sequence: 15 - UCCCUGUCCUCCAGGAGCUCACGU - 38
• Evidence: not_experimental

Mature ptr-miR-339-3p

• Accession: MIMAT0008107
• Description: Pan troglodytes ptr-miR-339-3p mature miRNA
• Sequence: 50 - UGAGCGCCUCGACGACAGAGCCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70