Stem-loop ptr-mir-340

Accession

MI0008628

Description

Pan troglodytes ptr-mir-340 precursor miRNA

Literature search

1 open access papers mention ptr-mir-340
(1 sentences)

Sequence

53639 reads, 481.0 reads per million, 24 experiments

uuguaccuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCcauaccugguaucuu
..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))...

Structure

-uu     u      a        -CAA      U    g     ug 
   guacc ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
   ||||| |||||| ||||||||    |||||| |||| |||||  c
   uaugg ccauac GAUAUUUC    ACUCUG CUag ggugu  g
uuc     u      C        AUUG      C    -     uu 

Annotation confidence High

Genome context

chr5: 180589191-180589284 [-]

Mature ptr-miR-340-5p

• Accession: MIMAT0008109
• Description: Pan troglodytes ptr-miR-340-5p mature miRNA
• Sequence: 16 - UUAUAAAGCAAUGAGACUGAUU - 37
• Evidence: not_experimental

Mature ptr-miR-340-3p

• Accession: MIMAT0052332
• Description: Pan troglodytes ptr-miR-340-3p mature miRNA
• Sequence: 58 - UCCGUCUCAGUUACUUUAUAGC - 79
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70